3d protein structure prediction computational method alphafold2 Search Results


alphafold2  (Deepmind Technologies Ltd)
86
Deepmind Technologies Ltd alphafold2
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Alphafold2, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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alphafold2  (Schrodinger LLC)
90
Schrodinger LLC alphafold2
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Alphafold2, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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alphafold2 - by Bioz Stars, 2026-07
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alphafold 2 resource  (Deepmind Technologies Ltd)
86
Deepmind Technologies Ltd alphafold 2 resource
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Alphafold 2 Resource, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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alphafold 2 resource - by Bioz Stars, 2026-07
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pfam database  (InterPro Inc)
90
InterPro Inc pfam database
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Pfam Database, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
pfam database - by Bioz Stars, 2026-07
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pymol  (Schrodinger LLC)
90
Schrodinger LLC pymol
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Pymol, supplied by Schrodinger LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
pymol - by Bioz Stars, 2026-07
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bepipred 3  (HealthTech Connex Inc)
90
HealthTech Connex Inc bepipred 3
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Bepipred 3, supplied by HealthTech Connex Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+protein+structure+prediction+computational+method+alphafold2/pmc11731929-84-17-25?v=HealthTech+Connex+Inc
Average 90 stars, based on 1 article reviews
bepipred 3 - by Bioz Stars, 2026-07
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alphafold  (Deepmind Technologies Ltd)
86
Deepmind Technologies Ltd alphafold
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Alphafold, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+protein+structure+prediction+computational+method+alphafold2/pmc12649696-80-0-19?v=Deepmind+Technologies+Ltd
Average 86 stars, based on 1 article reviews
alphafold - by Bioz Stars, 2026-07
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alphafold 2 0  (Deepmind Technologies Ltd)
86
Deepmind Technologies Ltd alphafold 2 0
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Alphafold 2 0, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+protein+structure+prediction+computational+method+alphafold2/pmc12440919-57-11-13?v=Deepmind+Technologies+Ltd
Average 86 stars, based on 1 article reviews
alphafold 2 0 - by Bioz Stars, 2026-07
86/100 stars
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atomic level precision  (Deepmind Technologies Ltd)
86
Deepmind Technologies Ltd atomic level precision
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Atomic Level Precision, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 86 stars, based on 1 article reviews
atomic level precision - by Bioz Stars, 2026-07
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autodock vina software  (AUTODOCK GmbH)
90
AUTODOCK GmbH autodock vina software
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Autodock Vina Software, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+protein+structure+prediction+computational+method+alphafold2/pm38179943-176-16-15?v=AUTODOCK+GmbH
Average 90 stars, based on 1 article reviews
autodock vina software - by Bioz Stars, 2026-07
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smac_06964  (SMAC Corp)
90
SMAC Corp smac_06964
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Smac 06964, supplied by SMAC Corp, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+protein+structure+prediction+computational+method+alphafold2/pmc11244814-40-36-37?v=SMAC+Corp
Average 90 stars, based on 1 article reviews
smac_06964 - by Bioz Stars, 2026-07
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optilab  (Waters Corporation)
99
Waters Corporation optilab
Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using <t>AlphaFold2</t> (DeepMind; <t>https://alphafoldserver.com</t> ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance
Optilab, supplied by Waters Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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optilab - by Bioz Stars, 2026-07
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Image Search Results


Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using AlphaFold2 (DeepMind; https://alphafoldserver.com ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance

Journal: TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik

Article Title: Fine mapping, introgression, and KASP marker development for powdery mildew resistance in watermelon using an interspecific RIL population ( Citrullus mucosospermus × C. lanatus )

doi: 10.1007/s00122-025-05079-4

Figure Lengend Snippet: Predicted tertiary structures of the ClCG02G015730 protein from the resistant (USVL531-MDR) and susceptible (USVL677-PMS) watermelon genotypes. Protein 3D models were generated using AlphaFold2 (DeepMind; https://alphafoldserver.com ). Both alleles exhibited nearly identical α-helical architectures with high per-residue confidence scores (pLDDT > 90), indicating well-defined and stable folding. The resistant allele (USVL531-MDR) differed from the susceptible allele (USVL677-PMS) by a single conservative Met ↔ Val substitution located within a flexible surface loop. This substitution does not alter the overall fold but may influence local flexibility or modify protein–protein interaction potential associated with powdery mildew resistance

Article Snippet: Protein 3D models were generated using AlphaFold2 (DeepMind; https://alphafoldserver.com ).

Techniques: Generated, Residue